Neuro-photonics Publications – Neural Interface Engineering Lab (NIEL)

Qian, Y., Piatkevich K. D., Mc Larney, B., Abdelfattah, A. S., Mehta, S., Murdock, M. H., Gottschalk, S., Molina, R. S., Zhang, W., Chen, Y., Wu, J., Drobizhev, M., Hughes, T. E., Zhang, J., Schreiter, E. R., Shoham, S., Razansky, D., Boyden, E. S., & Campbell R. E., A genetically encoded near-infrared fluorescent calcium ion indicator, Nature Methods, (2019). doi: 10.1038/s41592-018-0294-6.
Shor E., Merdler U., Brosh I., Shoham S.^† & Levenberg S.^†, Induced neuro-vascular interactions robustly enhance functional attributes of engineered neural implants, Biomaterials, 180, 1-11 (2018). doi:10.1016/j.biomaterials.2018.07.001.
Aharoni T. & Shoham S., Phase-controlled, speckle-free holographic projection with applications in precision optogenetics, Neurophotonics, 5(2), 025004 (2018). doi: 10.1117/1.NPh.5.2.025004.
Plaksin M., Shapira E., Kimmel E. & Shoham S., Thermal transients excite neurons through universal intramembrane mechano-electrical effects, Phys. Rev. X., 8(1), 011043 (2018). doi: 10.1103/PhysRevX.8.011043.
Plaksin M., Kimmel E. & Shoham S.,Correspondence: Revisiting the theoretical cell membrane thermal capacitance response, Nature Communications, 8(1), 1431 (2017). doi: 10.1038/s41467-017-00435-5. Correspondence reply.
Original article: Shapiro M. G., Homma K., Villarreal S., Richter C.-P. & Bezanilla F., Infrared light excites cells by changing their electrical capacitance, Nature Communications, 3, 736 (2012). doi: 10.1038/ncomms1742.
Weissler Y., Farah N. & Shoham S., Simulation of morphologically structured photo-thermal neural stimulation, Journal of Neural Engineering, 14(5), 055001 (2017). doi: 10.1088/1741-2552/aa7805.
Boutte R. W., Merlin S., Yona G., Griffiths B., Angelucci A., Kahn I., Shoham S. & Blair S., Utah optrode array customization using stereotactic brain atlases and 3-D CAD modeling for optogenetic neocortical interrogation in small rodents and nonhuman primates, Neurophotonics, 4(4), 041502 (2017). doi: 10.1117/1.NPh.4.4.041502.
Deán-Ben X. L., Gottschalk S., Mc Larney B., Shoham S. & Razansky D., Advanced optoacoustic methods for multiscale imaging of in vivo dynamics, Chemical Society Review, 46(8), 2158-2198 (2017). doi: 10.1039/C6CS00765A.
Deán-Ben X. L., Gottschalk S., Sela G., Shoham S. & Razansky D., Functional optoacoustic neuro-tomography of calcium fluxes in adult zebrafish brain in vivo, Optics Letters, 42(5), 959-962 (2017). doi: 10.1364/OL.42.000959.
Marom A.*, Shor E.*, Levenberg S. & Shoham S., Spontaneous Activity Characteristics of 3D “Optonets”, Frontiers in Neuroscience, 10, 602 (2017). doi: 10.3389/fnins.2016.00602.
Deán-Ben X. L.*, Sela G.*, Lauri A.*, Kneipp M., Ntziachristos V., Westmeyer G.^†, Shoham S.^† & Razansky D.^†, Functional optoacoustic neuro-tomography (FONT) for scalable whole-brain monitoring of calcium indicators, Light: Science & Applications, 5, e16201 (2016). doi: 10.1038/lsa.2016.201.
Media: Press release (Hebrew), medicalphysicsweb
Meitav N., Ribak EN. & Shoham S., Point spread function estimation from projected speckle illumination, Light: Science & Applications, 5, e16048 (2016). doi: 10.1038/lsa.2016.48.
Yona G., Meitav N., Kahn I. & Shoham S., Realistic Numerical and Analytical Modeling of Light Scattering in Brain Tissue for Optogenetic Applications, eNeuro, 3(1), (2016). doi: 10.1523/ENEURO.0059-15.2015.
Schejter Bar-Noam A., Farah N. & Shoham S., Correction-free remotely scanned two-photon in vivo mouse retinal imaging, Light: Science & Applications, 5, e16007 (2016). doi: 10.1038/Isa.2016.7.
Media: Press release (Hebrew, English), The Jerusalem Post, Labrigger
Farah N., Levinsky A., Brosh I., Kahn I. & Shoham S., Holographic fiber bundle system for patterned optogenetic activation of large-scale neuronal networks, Neurophotonics, 2(4), 045002 (2015). doi: 10.1117/1.NPh.2.4.045002.
Paluch S., Mayblum T., Dana H., Brosh I., Geffen I. & Shoham S., All-optical bidirectional neural interfacing using hybrid multiphoton holographic optogenetic stimulation, Neurophotonics, 2(3), 031208 (2015). doi: 10.1117/1.NPh.2.3.031208.
Marom A.*, Mahto S.K.*, Shor E., Sznitman J. & Shoham S., Microfluidic Chip for Site-specific Neuropharmacological Treatment & Activity Probing of 3D Neuronal ‘Optonet’ Cultures, Advanced Healthcare Materials, 4(10), 1477 (2015). doi: 10.1002/adhm.201570060.
Kneipp M., Turner J., Estrada H., Shoham S. & Razansky D., Effects of the murine skull in optoacoustic brain microscopy, Journal of Biophotonics, 9(1-2), 117-123 (2015). doi: 10.1002/jbio.201400152.
Dana H., Marom A., Paluch S., Dvorkin R., Brosh I. & Shoham S., Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks, Nature Communications, 5, 3997 (2014). doi: 10.1038/ncomms4997.
(Free access link on Europe PubMed)
Farah N., Zoubi A., Matar S., Golan L., Marom A., Butson C.R., Brosh I. & Shoham S., Holographically patterned activation using photo-absorber induced neural–thermal stimulation, Journal of Neural Engineering, 10(5), 056004 (2013). doi: 10.1088/1741-2560/10/5/056004.
Reutsky-Gefen I., Golan L., Farah N., Schejter A., Tsur L., Brosh I. & Shoham S., Holographic optogenetic stimulation of patterned neuronal activity for vision restoration, Nature Communications, 4, 1509 (2013). doi: 10.1038/ncomms2500.
Media: Press release (Hebrew,English), Maariv (Hebrew), Radio Interview (Hebrew), OpenOptogenetics
Dana H., Kruger N., Ellman A. & Shoham S., Line temporal focusing characteristics in transparent and scattering media, Optics Express, 21(5), 5677-5687 (2013). doi: 10.1364/OE.21.005677.
Ma R., Söntges S., Shoham S., Ntziachristos V. & Razansky D., Fast scanning coaxial optoacoustic microscopy, Biomedical Optics Express, 3(7), 1724-1731 (2012). doi: 10.1364/BOE.3.001724.
Schejter A., Tsur L., Farah N., Reutsky-Gefen I., Falick Y., & Shoham S., Cellular Resolution Panretinal Imaging of Optogenetic Probes Using a Simple Funduscope, Translational Vision Science and Technology, 1(2), 4 (2012). doi: 10.1167/tvst.1.2.4.
Dana H. & Shoham S., Remotely scanned multiphoton temporal focusing by axial grism scanning, Optics Letters, 37(14), 2913-2915 (2012). doi: 10.1364/OL.37.002913.
Szameit A.*, Shechtman Y.*, Osherovich E.*, Bullkich E., Sidorenko P., Dana H., Steiner S., Kley E. B., Gazit S., Cohen-Hyams T., Shoham S., Zibulevsky M., Yavneh I., Eldar Y. C., Cohen O. & Segev M., Sparsity-based single-shot sub-wavelength coherent diffractive imaging, Nature Materials, 11(5), 455-459 (2012). doi: 10.1038/nmat3289.
Matar S., Golan L. & Shoham S., Reduction of two-photon holographic speckle using shift-averaging, Optics Express, 19(27), 25891-25899 (2011). doi: 10.1364/OE.19.025891.
Dana H. & Shoham S., Numerical evaluation of temporal focusing characterisics in transparent and scattering media, Optics Express, 19(6), 4937-4948 (2011). doi: 10.1364/OE.19.004937.
Shoham S., Optogenetics meets optical wavefront shaping (News & Views), Nature Methods, 7(10), 798-799 (2010). doi: 10.1038/nmeth1010-798.
Shoham S. & Deisseroth K., Special issue on optical neural engineering: advances in optical stimulation technology (Editorial), Journal of Neural Engineering, 7(4), 040201 (2010). doi: 10.1088/1741-2560/7/4/040201.
Golan L., Reutsky I., Farah N. & Shoham S., Design and characteristics of holographic neural photo-stimulation systems, Journal of Neural Engineering, 6(6), 066004 (2009). doi: 10.1088/1741-2560/6/6/066004.
Matar S., Golan L., Farah N., Reutsky I. & Shoham S., Holographic photo-stimulation for dynamic control of neuronal population activity, Proceedings of IEEE 4th International Conference on Neural Engineering, 84-87 (2009).
Sarig-Nadir O.*, Livnat N.*, Zajdman R., Shoham S. & Seliktar D., Laser Photoablation of Guidance Microchannels into Hydrogels Directs Cell Growth in Three Dimensions, Biophysical Journal, 96(11), 4743-4752 (2009). doi: 10.1016/j.bpj.2009.03.019. | 1 | 2 | 3 |
Golan L. & Shoham S., Speckle elimination using shift-averaging in high-rate holographic projection, Optics Express, 17(3), 1330-1339 (2009). doi: 10.1364/OE.17.001330.
Farah N., Reutsky I. & Shoham S.,Patterned Optical Activation of Retinal Ganglion Cells, Proceedings of the 29th Annual International Conference of the IEEE EMBS, 6368-6370 (2007). doi: 10.1109/IEMBS.2007.4353812.
Shoham S.*, O’Connor D.H.*, Sarkisov D.V. & Wang S.S.H., Rapid neurotransmitter uncaging in spatially defined patterns, Nature Methods, 2(11), 837-843 (2005). doi: 10.1038/NMETH793. | 1 | 2 |